abl oncogene, 78
   cellular origin, 44, 58
   converted by environmental factors, 50
   Kipnis on, 91, 97
   oncogenic retroviruses, 30
   online chat, phase I patients, 199
   online petition, 206, 208
   Oregon Health and Science University (OHSU)
   Druker and, 136, 218, 238
   Knight Cancer Institute, 246
   Orem, Judy, 190, 218, 221, 244, 271
   Orphan Drug Act (ODA) (1983), 229
   orphan drugs, 229, 254
   overexpression, 106
   P
   p38 (protein), 266
   Painter, Theophilus, 35
   Parker, Peter, 48
   Patent and Trademark Law Amendments Act (Bayh-Dole Act), 263
   patent expiration, 258, 265
   Pazdur, Richard, 234
   PDGFR (platelet-derived growth factor receptor), 106, 114, 118, 119, 126, 138, 143, 163, 247
   personal genome sequencing, 261, 265, 269
   pharmaceutical companies, 131
   pharmaceutical industry, mergers in mid-1990s, 156
   phase I clinical trial (of CGP-57148B/STI-571), 146, 154, 171, 175
   blast crisis patients, 176, 178, 196, 198
   commitment of study participants, 182
   costs of, 178
   cytogenetic response, 183, 211
   drug delivery, 179
   early stage CML, 177, 178, 196
   FDA approval announcement mention, 235
   hematologic response, 183, 211
   length of trial, 180
   minimum/maximum drug level, 184
   objective, 178, 188
   organization of study, 181
   presentation of results to ASH (1999), 208, 210, 213
   sites, 181
   starting dose, 183
   phase I patients
   commitment of, 182
   online chats and message boards, 199
   phase II clinical trial (of STI-571), 196, 198, 201, 215, 216
   for accelerated disease patients, 216, 226
   for blast crisis CML, 204, 216, 218, 226, 249
   for chronic-stage disease, 204, 210, 216, 218, 227
   drug production expedited, 209, 213
   drug resistance, 249
   drug shortage for, 201, 202, 203, 205, 208, 209, 217
   FDA approval announcement mention, 235
   phase III clinical trial (of STI-571) (IRIS), 201, 219, 233, 247, 253, 255
   2-phenylaminopyrimidine, 126
   Philadelphia chromosome (Ph1)
   in 1960s, 22, 25
   abl gene moved to, 84
   about, 5, 79
   Bcr/Abl tyrosine kinase and, 106
   chromosome 9 and, 84, 85, 88
   chronic myeloid leukemia and, 93
   confirmation of existence, 21
   as deletion, 22, 38
   discovery, 15
   publication, 21
   Rowley’s work, 38
   as spontaneous mutation, 191
   as translocation, 39, 84, 85, 87
   phorbol esters, 106
   phosphates, signal transduction and, 47, 51
   phosphonates, 107
   phosphorylation, 54, 55, 89
   of bcr/abl fusion gene, 87
   of tyrosine, 102
   phosphotyrosine, antibody against, 102, 116
   PI3K, 266
   Picton, Colin, 48
   Piro, Lawrence, 90
   PKC (protein kinase C), 106, 110, 114, 118, 119, 122, 124, 126
   poliovirus, tyrosine and, 73
   Pollack, Andrew, 267
   polymerase chain reaction, 255, 256
   polyomavirus, 53, 73, 99, 129
   ponatinib, 260
   poverty, CML treatment and, 264
   prednisolone, 61
   preleukemia, 37
   proprietary name, 231, 232
   protein kinase, 46
   protein phosphorylation, 47, 89
   proteins, 29, 45
   “The Proteins of Oncogenes” (Hunter), 89
   proto-oncogenes, 44, 50, 77, 88
   abl oncogene, 78
   encoding kinases, 89
   purging, 145
   Q
   quercetin, 124
   quinacrine mustard, 37
   R
   radioactive src probe, 43, 60
   ras genes, 50
   rational drug design, 108, 112, 266
   reciprocal translocation, 39
   recombinant DNA, 49, 50, 76, 81, 82, 88
   Reinhardt, Jörg, 204, 215
   relapse, 197, 257
   resistance (drugs). See drug resistance
   retroviral oncogenes, cellular origin of, 44
   retroviruses, 30, 44, 78
   reverse transcriptase, 30, 64, 65
   RNA, 29
   RNA viruses, 29
   capture genes from host, 60, 78
   containing all genes needed for replication, 59
   replication, 64
   Roberts, Tom
   career, 97
   research, 99, 100, 102, 115
   Roche Pharmaceuticals, 104
   Rockefeller Institute for Medical Research, 25
   Rockefeller University, 25
   Romine, Bud, 158, 181, 182, 184, 193, 195, 215, 271
   Roscoe, May Belle, 190
   Rosenberg, Naomi
   about, 69, 71, 77, 88, 99
   career, 65
   research, 66, 72, 75, 113
   Rous, Peyton
   about, 25
   chicken cancerous tumor, 26, 88
   Rous sarcoma virus (RSV), 27, 29, 64, 88
   temperature-sensitive mutations, 31, 40
   Rowley, Janet
   about, 58, 183
   award, 245
   career, 36
   research, 37, 68, 81
   Rubin, Harry, 28, 31
   S
   Sandostatin, 167
   Sandoz, 120, 131, 139, 156
   Sawyers, Charles
   about, 150, 152, 200, 218
   award, 238
   research, 181, 182, 187, 188, 196, 197, 198, 248, 252, 257
   Scher, Chuck, 67
   Schering-Plough, 105
   second-generation tyrosine kinase inhibitors, 258, 261, 268
   serine, 54
   Shannon, James, 209
   Shoemaker, Chuck, 77
   signal cascade, 47, 51
   signal transduction, 47, 100
   signaling pathways
   inhibiting with drugs, 115
   triggered by bcr/abl fusion gene, 87
   skin cancer, 106
   Slater, Robert, 237
   Sprycel (dasatinib), 259
   src gene, 31, 40, 64
   original source of, 41, 49, 75, 88, 98
   protein product, 45
   Src kinase, 64, 74
   src probe, 43, 60
   Src protein, 40, 41, 45, 74
   staurosporine, 122, 124
   STI-571 (Novartis), 157
   accelerated approval, 214, 215, 230
   animal studies, 158, 170
   brand name, 230
   commercial production, 216
   drug shortage for phase II trial, 201, 202, 203, 205, 208, 209, 217
   duration of treatment in patients, 166, 169
   economics of development, 214
   “expanded access” trial, 220, 227
   fast-track designation, 214, 215, 230
   FDA approval, 232, 234
   FDA review, 214, 227, 230
   generic name, 230
   investigational new drug (IND) application, 154, 165, 169
   lack of response to, 197, 198
   name of and FDA, 230
   orphan drug status granted, 229
   phase I clinical trial, 171, 175
   phase II clinical trial, 196, 198, 201, 215, 216
   phase III clinical trial (IRIS), 201, 219, 233, 247, 253, 255
   priority review status, 230
   relapse, 197, 257
   side effects, 188, 194, 211, 227, 248
   
success stories in STI Gazette, 217, 222
   supply of drug for phase II trials, 201, 202, 203, 205, 208, 209, 217
   toxicity concerns, 160, 163, 164, 169, 171, 179, 211, 233
   See also CGP-57148B
   STI Gazette (newsletter), 185, 217, 221, 232, 270
   Stiles, Chuck, 115, 116, 163
   stomach cancer, 247, 266
   sunitinib, 266
   survival data, 267
   swanson, Robert, 50
   T
   T-cell cancer, 61
   T-cell leukemia, 76
   T cells, 60, 61
   T315 mutation, 260
   Talpaz, Moshe, 151, 181, 187, 188, 197, 200
   tamoxifen, 132, 235
   targeted therapy, 109, 266, 267
   Tasigna (nilotinib), 259
   Tay-Sachs disease, 82
   technology transfer, Bayh-Dole Act, 263
   Temin, Howard, 28, 30, 58, 64, 65
   ten-year survival data, 267
   testicular cancer, 97
   testing
   combinations of experimental drugs, 264
   exploration of new ways, 262
   Gleevec development, 113, 114, 117, 138, 152
   thalidomide babies, 162
   Thompson, Tommy, 234, 247
   threonine, 54
   Tjio, Joe Hin, 35, 144
   TKL family, 266
   transfer agreements, 263
   transformation system, 67, 68, 69, 71, 89
   transforming viruses, 30
   “translational research,” 100
   translocation, 39, 81, 84, 85, 87
   Traxler, Peter, 110, 123, 127, 128
   tumor sequencing, 261, 265
   tyrosine, 55, 58, 73, 102
   tyrosine kinase
   blocking, 102
   early research, 55, 73, 74, 75, 78, 86, 88
   tyrosine kinase inhibitors
   new drug development, 265
   for non-responders, 260
   sales projections, 266
   second-generation, 258, 261, 268
   See also Gleevec; kinase inhibition
   tyrosine kinases, study outside of the cell, 115
   tyrosine phosphorylation, 55
   U
   upfront resistance, 250, 251
   V
   v-erbB protein, 106
   v-sis protein, 106
   Varmus, Harold, 42, 43, 44, 68, 72, 75, 77, 78, 88, 98, 99
   Vasella, Daniel
   about, 167, 213, 264
   academia-industry collaborations, 262
   clinical trials, 168, 169
   drug supply for phase II, 203
   FDA approval announcement, 234, 236
   Magic Cancer Bullet, 237
   Matter and, 167
   McNamara online petition, 206
   on Novartis drug cost assistance program, 244
   patent expiration, 258
   Verma, Inder, 77
   viruses
   cancer and, 27, 30, 58, 88
   recombinant DNA, 49, 50, 76, 81, 82, 88
   transformation system, 67, 68, 69, 71, 89
   types, 28
   Vogelstein, Bert, 265
   W
   Watson, James, 158
   Weinberg, Robert A., xiii, 98, 115
   white blood cells, 61
   in leukemia patients, 19
   Wigler, Michael, 98
   Wilkins, Maurice, 158
   Witte, Owen
   about, 74, 79, 81, 89, 152
   career, 69, 70, 78, 79
   research, 69, 73, 75, 78, 85, 86, 88, 89, 102, 112, 118, 267
   World Wide Web, phase I patient chats, 199
   X
   x-ray crystallography, 251
   Z
   Zimmermann, Jürg
   about, 148, 249
   career, 121, 140
   early life, 120
   opinions and quotes, 108, 109, 110, 147, 162
   research, 123, 124, 163, 182, 251, 252
   PHOTO CREDITS
   1. Peter Nowell, MD, and David Hungerford: Photograph taken by Larry Keighley, courtesy of Alice Hungerford.
   2, 3. Microscope photographs of the Philadelphia chromosome: Photograph courtesy of Alice Hungerford.
   4. Naomi Rosenberg’s cell cultures: Photograph courtesy of Naomi Rosenberg.
   5. Barred Plymouth Rock hen: 1910, Rockefeller University Press. Originally published in The Journal of Experimental Medicine. 12:696–705.
   6. Bone marrow biopsy: Republished with permission of the American Society for Clinical Investigation, from “Applying the Discovery of the Philadelphia chromosome,” Daniel W. Sherbenou and Brian J. Druker, Journal of Clinical Investigation, Volume 117, Issue 8, 2007; permission conveyed through Copyright Clearance Center, Inc.
   7. src probe diagram: Illustration © Molly Feuer, Feuer Illustration. Text by the author.
   8. Janet D. Rowley, MD: Photograph courtesy of Janet D. Rowley.
   9. Philadelphia chromosome translocation: © 2007 Terese Winslow, U.S. Govt. has certain rights.
   10. Karyotype with Philadelphia chromosome: From the Department of Pathology and Clinical Laboratory of the University of Pennsylvania School of Medicine. Image courtesy of Peter C. Nowell, MD, and Kristin Nowell.
   11. From Philadelphia chromosome to CML diagram: Illustration © Molly Feuer, Feuer Illustration. Text by the author.
   12, 13. Hematologic and cytogenetic (FISH) responses to CML: Republished with permission of the American Society for Clinical Investigation, from “Applying the Discovery of the Philadelphia chromosome,” Daniel W. Sherbenou and Brian J. Druker, Journal of Clinical Investigation, Volume 117, Issue 8, 2007; permission conveyed through Copyright Clearance Center, Inc.
   14. Jürg Zimmermann: Photograph courtesy of Jürg Zimmermann.
   15. Elisabeth Buchdunger: Photograph courtesy of Elisabeth Buchdunger.
   16. Warren Alpert Prize award ceremony: Photograph courtesy of The Warren Alpert Foundation.
   17. Brian Druker, MD, and LaDonna Lopossa: Photograph by Michael McDermott and courtesy of Oregon Health & Science University.
   18. Gleevec pill: Photograph courtesy of Novartis.
   19. 50th anniversary group photo: Photograph courtesy of Fox Chase Cancer Center.
   20. Gary Eichner and son: Photograph courtesy of Gary Eichner.
   21. Novartis ad featuring Suzan McNamara: © Novartis.
   ABOUT THE AUTHOR
   JESSICA WAPNER is a freelance science writer focused mainly on health care and medicine. Her work has appeared in publications including Scientific American, Slate, The New York Times, theatlantic.com, New York, Science, Nature Medicine, the Ecologist, the Scientist, and Psychology Today. Her writing on cancer research and treatment has also appeared in the patient-focused magazines CR and Cure, and she has been a frequent contributor to the industry publication Oncology Business Review. She lives with her family in Beacon, New York.
   www.JessicaWapner.com
   * Following scientific convention, genes in this book are denoted in lowercase italics (hence src), and proteins are capitalized and in plain font (hence Src).
   † Bishop, who, together with lab member Art Levinson, had likewise been searching for the src gene product, also found the kinase. Their paper was published three months later. Credit for the discovery goes to Erikson and Collett.
   ‡ The technology behind recombinant DNA is credited to Herb Boyer, then at the University of California–San Francisco, and Stanley Cohen, then at Stanford University. In 1976, Boyer and venture capitalist Robert Swanson founded Genentech, the first biotech company, with the goal of using recombinant DNA to develop new drugs. The company’s first product, human insulin, was cloned in 1978. The pharmaceutical company Eli Lilly licensed the drug, which was approved in 1982.
   
   
   
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 The Philadelphia Chromosome Page 33