The Viral Storm

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The Viral Storm Page 25

by Nathan Wolfe


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  Rusnak, J. M., M. G. Kortepeter, R. J. Hawley, A. O. Anderson, E. Boudreau, and E. Eitzen. “Risk of Occupationally Acquired Illness from Biological Threat Agents in Unvaccinated Laboratory Workers.” Biosecurity and Bioterrorism: Biodefense Strategy, Practice, and Science 2, no. 4 (2004): 281–93; doi:10.1089/bsp.2004.2.281.

  Schwartz, J. “Fish Tale Has DNA Hook: Students Find Bad Labels.” New York Times, August 21, 2008, Science sec.

  Sidel, V. W., H. W. Cohen, and R. M. Gould. “Good Intentions and the Road to Bioterrorism Preparedness.” American Journal of Public Health 91, no. 5 (2001): 716–18.

  Silbergeld, E. K., J. Graham, and L. B. Price. “Industrial Food Animal Production, Antimicrobial Resistance, and Human Health.” Annual Review of Public Health 29, no. 1 (2008): 151–69; doi:10.1146/annurev.pubhealth.29.620907.090904.

  Snyder, J. W. “Role of the Hospital-Based Microbiology Laboratory in Preparation for and Response to a Bioterrorism Event.” Journal of Clinical Microbiology 41, no. 1 (2003): 1–4; doi:10.1128/JCM.41.1.1-4.2003.

  Trevejo, R. T., M. C. Barr, and R. A. Robinson. “Important Emerging Bacterial Zoonotic Infections Affecting the Immunocompromised.” Veterinary Research 36, no. 3 (2005): 493–506; doi:10.1051/vetres:2005011.

  Tucker, J. B. “Historical Trends Related to Bioterrorism: An Empirical Analysis.” Emerging Infectious Diseases 5, no. 4 (1999): 498–504.

  UN-Habitat, United Nations Human Settlements Programme. State of the World’s Cities, 2010/2011—Cities for All: Bridging the Urban Divide, 2010.

  “Update: Multistate Outbreak of Monkeypox—Illinois, Indiana, Kansas, Missouri, Ohio, and Wisconsin, 2003.” Centers for Disease Control and Prevention, February 9, 2011; http://www.cdc.gov/mmwr/preview/mmwrhtml/mm5227a5.htm.

  Wang, L. F., and B. T. Eaton. “Bats, Civets, and the Emergence of SARS.” Current Topics in Microbiology and Immunology 315 (2007): 325–44; doi:10.1007/978-3-540-70962-6_13.

  Wolfe, N. D., P. Daszak, M. Kilpatrick, and D. S. Burke. “Bushmeat Hunting, Deforestation, and Prediction of Zoonotic Disease Emergence.” Emerging Infectious Diseases 11, no. 12 (2005): 1822–27.

  Wolfe, N. D., M. Ngole Eitel, J. Gockowski, P. K. Muchaal, C. Nolte, A. Tassy Prosser, J. Ndongo Torimiro, S. F. Weise, and D. S. Burke. “Deforestation, Hunting and the Ecology of Microbial Emergence.” Global Change and Human Health 1, no. 1 (2000): 10–25; doi:10.1023/A:1011519513354.

  Woolhouse, M. E. J., R. Howey, E. Gaunt, L. Reilly, M. Chase-Topping, and N. Savill. “Temporal Trends in the Discovery of Human Viruses.” Proceedings of the Royal Society B: Biological Sciences 275, no. 1647 (2008): 2111–15; doi:10.1098/rspb.2008.0294.

  Zhang, X. W., Y. L. Yap, and A. Danchin. “Testing the Hypothesis of a Recombinant Origin of the SARS-Associated Coronavirus.” Archives of Virology 150, no. 1 (2005): 1–20; doi:10.1007/s00705-004-0413-9.

  Zimmer, S. M., and D. S. Burke. “Historical Perspective—Emergence of Influenza A (H1N1) Viruses.” New England Journal of Medicine 361, no. 3 (2009): 279–85; doi:10.1056/NEJMra0904322.

  9: VIRUS HUNTERS

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  Carr, J. K., N. D. Wolfe, J. N. Torimiro, U. Tamoufe, E. Mpoudi-Ngole, L. Eyzaguirre, D. L. Birx, F. E. McCutchan, and D. S. Burke. “HIV-1 Recombinants with Multiple Parental Strains in Low-Prevalence, Remote Regions of Cameroon: Evolutionary Relics?” Retrovirology 7 (2010): 39; doi:10.1186/1742-4690-7-39.

  Deblauwe, I., P. Guislain, J. Dupain, and L. Van Elsacker. “Use of a Tool-Set by Pan troglodytes troglodytes to Obtain Termites (Macrotermes) in the Periphery of the Dja Biosphere Reserve, Southeast Cameroon.” American Journal of Primatology 68, no. 12 (2006): 1191–96; doi:10.1002/ajp.20318.

  Formenty, P., C. Hatz, B. Le Guenno, A. Stoll, P. Rogenmoser, and A. Widmer. “Human Infection Due to Ebola Virus, Subtype Côte D’Ivoire: Clinical and Biologic Presentation.” Journal of Infectious Diseases 179, no. S1 (1999): S48–53; doi:10.1086/514285.

  Kalish M. L., N. D. Wolfe, C. Ndongmo, C. Djoko, K. E. Robbins, J. McNicholl, M. Aidoo, P. Fonjungo, G. Alemnji, E. Mpoudi-Ngole, C. Zeh, T. M. Folks, and D. S. Burke. “Central African Hunters Exposed to SIV.” Emerging Infectious Diseases 11 (2005): 1928–30.

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  Leendertz, F. H., et al. “Anthrax in Western and Central African Great Apes.” American Journal of Primatology 68, no. 9 (2006): 928–33; doi:10.1002/ajp.20298.

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  Pike, B. L., K. E. Saylors, J. N. Fair, M. LeBreton, U. Tamoufe, C. F. Djoko, A. W. Rimoin, and N. D. Wolfe. “The Origin and Prevention of Pandemics.” Clinical Infectious Diseases 50, no. 12 (2010): 1636–40; doi:10.1086/652860.

  Pruetz, J. D., and P. Bertolani. “Savanna Chimpanzees, Pan troglodytes verus, Hunt with Tools.” Current Biology 17, no. 5 (2007): 412–17; doi:10.1016/j.cub.2006.12.042.

  Switzer, W. M., I. Hewlett, L. Aaron, N. D. Wolfe, D. S. Burke, T. M. Folks, and W. Heneine. “Serological Testing for Human T-lymphotropic Virus-3 and -4.” Transfusion 46 (2006): 1647–48; doi:10.1111/j.1537-2995.2006.00950.X.

  Switzer, W. M., M. Salemi, V. Shanmugam, F. Gao, M. Cong, C. Kuiken, V. Bhullar, B. E. Beer, D. Vallet, A. Gautier-Hion, Z. Tooze, F. Villinger, E. C. Holmes, and W. Heneine. “Ancient Co-Speciation of Simian Foamy Viruses and Primates.” Nature 434, no. 7031 (2005): 376–80; doi:10.1038/nature03341.

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  Wolfe, N. D., et al. “Emergence of Unique Primate T-lymphotropic Viruses among Central African Bushmeat Hunters.” Proceedings of the National Academy of Sciences 102, no. 22 (2005): 7994–99; doi:10.1073/pnas.0501734102.

  _____. “Naturally Acquired Simian Retrovirus Infections in Central African Hunters.” Lancet 363, no. 9413 (2004): 932–37; doi:10.1016/S0140-6736(04)15787-5.

  Wolfe, N. D., W. M. Switzer, T. M. Folks, D. S. Burke, and W. Heneine. “Simian Retroviral Infections in Human Beings.” Lancet 364 (2004): 139–40 [letter].

  Wolfe, N. D., A. A. Escalante, W. B. Karesh, A. Kilbourn, A. Spielman, and A. A. Lal. “Wild Primate Populations in Emerging Infectious Disease Research: The Missing Link?” Emerging Infectious Diseases 4, no. 2 (1998): 149–58.

  Wolfe, N. D., A. T. Prosser, J. K. Carr, U. Tamoufe, E. Mpoudi-Ngole, J. N. Torimiro, M. LeBreton, F. E. McCutchan, D. L. Birx, and D. S. Burke. “Exposure to Nonhuman Primates in Rural Cameroon.” Emerging Infectious Diseases 10 (2004): 2094–99.

  10: MICROBE FORECASTING

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  Christakis, N. A., and J. H. Fowler. “Social Network Sensors for Early Detection of Contagious Outbreaks.” PLoS ONE e12948 5, no. 9 (2010); doi:10.1371/journal.pone.0012948.

  Dezsö, Z., and A.-L. Barabási. “Halting Viruses in Scale-Free Networks.” Physical Review E 65, no. 5 (2002); doi:10.1103/PhysRevE.65.055103.

  Eagle, N., A. Pentland, and D. Lazer. “Inferring Friendship Network Structure by Using Mobile Phone Data.” Proceedings of the National Academy of Sciences 106, no. 36 (2009): 15274–78; doi:10.1073/pnas.09
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  Freifeld, C. C., Rumi C., S. R. Mekaru, E. H. Chan, T. Kass-Hout, A. Ayala Iacucci, and J. S. Brownstein. “Participatory Epidemiology: Use of Mobile Phones for Community-Based Health Reporting.” PLoS Medicine e1000376 7, no. 12 (2010); doi:10.1371/journal.pined.1000376.

  Ginsberg, J., M. H. Mohebbi, R. S. Patel, L. Brammer, M. S. Smolinski, and L. Brilliant. “Detecting Influenza Epidemics Using Search Engine Query Data.” Nature 457, no. 7232 (2008): 1012–14; doi:10.1038/nature07634.

  Gómez-Sjöberg, R., A. A. Leyrat, D. M. Pirone, C. S. Chen, and S. R. Quake. “Versatile, Fully Automated, Microfluidic Cell Culture System.” Analytical Chemistry 79, no. 22 (2007): 8557–63; doi:10.1021/ac071311w.

  González, M. C., C. A. Hidalgo, and A.-L. Barabási. “Understanding Individual Human Mobility Patterns.” Nature 453, no. 7196 (2008): 779–82; doi:10.1038/nature06958.

  Kapoor, A., N. Eagle, and E. Horvitz. “People, Quakes, and Communications: Inferences from Call Dynamics about a Seismic Event and Its Influences on a Population.” Association for the Advancement of Artificial Intelligence Spring Symposium Series (2010): 51–56.

  Lampos, V., and N. Cristianini. “Tracking the Flu Pandemic by Monitoring the Social Web.” 2nd International Workshop on Cognitivie Information Processing (2010): 411–16; doi:10.1109/CIP.2010.5604088.

  Lauring, A. S., J. O. Jones, and R. Andino. “Rationalizing the Development of Live Attenuated Virus Vaccine.” Nature Biotechnology 28, no. 6 (2010): 573–79; doi:10.1038/nbt.1635.

  Lauring, A. S., and R. Andino. “Quasispecies Theory and the Behavior of RNA Viruses.” PLoS Pathogens e1001005 6, no. 7 (2010); doi:10.1371/journal.ppat.1001005.

  Lipkin, W. I. “Microbe Hunting.” Microbiology and Molecular Biology Reviews 74, no. 3 (2010): 363–77.

  Meyers, L. A., M. E. J. Newman, and B. Pourbohloul. “Predicting Epidemics on Directed Contact Networks.” Journal of Theoretical Biology 240, no. 3 (2006): 400–18; doi:10.1016/j.tbi.2005.10.004.

  Palacios, G., J. Druce, L. Du, T. Tran, C. Birch, T. Briese, S. Conlan, P. L. Quan, J. Hui, J. Marshall, J. F. Simons, M. Egholm, C. D. Paddock, W. J. Shieh, C. S. Goldsmith, S. R. Zaki, M. Catton, and W. I. Lipkin. “A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases.” New England Journal of Medicine 358, no. 10 (2008): 991–98; doi:10.1056/NEJMoa073785.

  Paneth, N. “Assessing the Contributions of John Snow to Epidemiology: 150 Years After Removal of the Broad Street Pump Handle.” Epidemiology 15, no. 5 (2004): 514–16; doi:10.1097/01.ede.0000135915.94799.00.

  Pastor-Satorras, R., and A. Vespignani. “Epidemic Dynamics and Endemic States in Complex Networks.” Physical Review E 63, no. 6 (2001); doi:10.1103/PhysRevE.63.066117.

  Polgreen, P. M., F. D. Nelson, and G. R. Neumann. “Healthcare Epidemiology: Use of Prediction Markets to Forecast Infectious Disease Activity.” Clinical Infectious Diseases 44, no. 2 (2007): 272–79; doi:10.1086/510427.

  Quan, P.-L., T. Briese, G. Palacios, and W. I. Lipkin. “Rapid Sequence-Based Diagnosis of Viral Infection.” Antiviral Research 79, no. 1 (2008): 1–5; doi:10.1016/j.antiviral.2008.02.002.

  Safaie, A., S. M. Mousavi, R. E. LaPorte, M. M. Goya, and M. Zahraie. “Introducing a Model for Communicable Diseases Surveillance: Cell Phone Surveillance (CPS).” European Journal of Epidemiology 21, no. 8 (2006): 627–32; doi:10.007/s10654-006-9033-x.

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  Snow, J. “Cholera, and the Water Supply in the South Districts of London.” British Medical Journal 1, no. 42 (1857): 864–65.

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  Tang, P., and C. Chiu. “Metagenomics for the Discovery of Novel Human Viruses.” Future Microbiology 5, no. 2 (2010): 177–89; doi:10.2217/fmb.09.120.

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  11: THE GENTLE VIRUS

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  Turnbaugh, P. J., V. K. Ridaura, J. J. Faith, F. E. Rey, R. Knight, and J. I. Gordon. “The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice.” Science Translational Medicine 1, no. 6 (2009); doi:10.1126/scitrans/med.3000322.

 

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