H00102--00A, Front mat Genesis

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by Charles Baum


  “Hi, Bob!” he said, with his usual big smile, his thick black mus-

  tache and curly black hair making him seem younger than his years.

  (“It comes from drinking lots of good red wine,” he’d say.) Piles of

  manuscripts and journals covered most of his desk and surrounding

  tables; banks of neatly labeled filing cabinets hinted that he had the

  upper hand on entropy. Glenn leaned back in his chair, hands behind

  his head—a characteristic gesture I’d soon come to learn. “What’s up?”

  I described the chirality experiments and their implications for

  origins research in as sexy a way as I could. Glenn nodded often, but

  his smile slowly faded. When I had finished, he launched into an in-

  timidating list of his own amino acid projects already underway.

  Glenn’s research exploited the fact that although almost all of life’s

  amino acids are left-handed, as soon as an organism dies, a slow, in-

  exorable process called racemization—the random flipping of mol-

  ecules from L to D and vice versa—begins. Eventually, after a few tens of

  thousands of years, an organism’s amino acids will have completely

  randomized to a 50:50 mixture. This tendency for the D:L ratio of

  amino acids to change over time provides a powerful dating technique:

  The older the shell or bone, the closer its amino acids will be to a 50:50

  mix. Other factors—notably the average water temperature, the acid-

  ity, and the salinity—also affect the rate of racemization; the D:L ratio

  in a fossil can thus provide evidence for changes in ancient environ-

  ments. Glenn was one of the world’s experts in determining that cru-

  cial ratio, so scientists from all over asked for his help. In one ongoing

  collaboration, he determined the ages of fossil eggshells from Austra-

  lia, to help understand long-term changes in the continent’s vegeta-

  tion. Another project used clam shells to measure recent changes in the

  salinity of the Venetian Lagoon. He also was studying amino acids in

  fossil shells from the Baja Peninsula of Mexico to deduce patterns of

  climate change.

  But his biggest and boldest effort was his long-term collaboration

  with Harvard paleontologist Stephen Jay Gould on the evolution of

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  GENESIS

  Cerion, a beautiful little Bahamian land snail. Glenn had helped to col-

  lect countless thousands of these inch-long shells from deep pits dug

  into remote sand dunes. The major part of the collection was exhumed

  from a deserted stretch of Long Island in the Bahamas. Glenn’s Cerion

  specimens displayed remarkable variations, even though all were mem-

  bers of a single species. Some shells were elongated, while others were

  almost round; some richly decorated, others almost smooth. These and

  several dozen other morphological characteristics provided Gould with

  a perfect species to test his provocative theories of evolutionary change.

  Glenn’s job was to provide the critical dating by analyzing D:L ratios

  from thousands of individual shells. Once supplied with enough dif-

  ferently shaped shells, their ages, and the DNA analyses performed by

  another colleague, Gould hoped to tease out the evolutionary path-

  ways of gradual morphological change. Years, maybe decades, of work

  lay ahead.

  Given these commitments, Glenn was certainly too busy to take

  on a new project. Yet he was also intrigued. Chiral selection was a new

  challenge for his analytical system, and he knew a good project when

  he saw it.

  “Looks like it’s about time for lunch!” he said, abruptly changing

  the subject.

  “Let me take you.” I sensed a setup, but I would have done just

  about anything to secure his help.

  “There’s a nice little place a couple of blocks from here. Kinkead’s.”

  It wasn’t a question.

  “Sure, let’s go.”

  Kinkead’s specializes in seafood, to which Glenn was deathly aller-

  gic; he even had to wear protective gloves when handling his favorite

  Cerion shells. But Kinkead’s had a great wine list, and Glenn had a

  passion for good red wines. Glenn ordered glasses of two different

  wines and extra glasses for each of us, so we could compare and con-

  trast. Some months later, I learned that Kinkead’s was a kind of test;

  had I balked at the noontime diversion, our collaboration might never

  have happened.

  Evidently I passed. “OK,” he said, and paused. “You’ll have to

  derivatize the samples, but I’ll do the analyses.” So I would have to do a

  bit of chemical prep work, but I was in business.

  Glenn had to maintain his analytical facility in the same large room

  as the undergraduate anthropology lab at George Washington. The first

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  183

  thing you notice on entering is the inordinate number of bones—doz-

  ens of human skulls, legs, ribs, and hip bones in wooden trays and

  glass display cases. A fully mounted human skeleton (lacking only the

  odd digit and forelimb) presides slack-jawed over the unsettling scene.

  A long, black-topped table surrounded by two dozen padded stools

  occupied the center of the 25 × 40-foot space. Glenn had a cramped 3-

  foot-square chemical hood on one side of the room and his arsenal of

  state-of-the-art gas chromatographs along the opposite wall, where any

  undergraduate might inadvertently bump into them. How could any-

  one work effectively under these conditions, I wondered? And yet one

  quickly learns to focus only on the diminutive vials and their secrets.

  I showed up there mid-morning of the following week to prepare

  my amino acid samples for analysis. The aspartic acid had to be chemi-

  cally modified so that the D- and L-amino acids could be separated

  more efficiently by gas chromatography. The amino acid molecules,

  which normally dry to a white powder, had to be treated so that they

  evaporated to a gas at high temperature. Under Glenn’s guidance, I

  made sure each sample was completely dried down, then added a mil-

  liliter of thionyl chloride, an orange-tinged toxic liquid, and tightly

  capped the vials under a stream of nitrogen gas. Then we cooked the

  samples, two dozen at a time, in the oven.

  I have never watched a scientist more meticulous in his procedures

  than Glenn, who proved to be one of the most exacting, finicky experi-

  mentalists I’d ever met. Like a master chef, he prepared amino acid

  samples for analysis the same way every time. He heated them at 100°C

  for one hour in a small, squat oven, instructing me to open the oven

  door quickly and place the tray of vials on the shelf in one swift ges-

  ture. Close the door within 4 seconds to keep the temperature at the

  proper level. If the temperature dropped even 0.2°C, he recorded it in

  his lab notebook.

  An hour later, to the second, I had to remove the samples from the

  oven with a similar smooth motion. If I was 10 or 15 seconds late, his

  mustache would twitch and the discrepancy went into the notebook.

  One secret to Glenn’s success was his absolute, rigorous reproducible

  procedures.

  Once th
e rows of vials had cooled, I opened each one, dried them

  under a vacuum, added a second chemical (trifluoroacetic acid anhy-

  dride), sealed the vials, and heated them again for exactly five minutes.

  At the end of this process, each amino acid sample had been modified

  184

  GENESIS

  to a volatile form that was ready to analyze. We transferred a small

  volume from each into glass autosampler vials, loaded up the gas chro-

  matograph, and set it to run overnight.

  Glenn and I were paranoid about the potential for unconscious

  bias. We knew exactly the chiral effects we were looking for—certain

  faces should select L-molecules and others D-molecules, while the frac-

  ture surfaces should display no preference. So I randomly renumbered

  the samples and Glenn renumbered them again in his own notebook.

  That way, neither of us would know which sample came from which

  face until after we’d completed all the analyses and compared num-

  bers. It’s all too easy to see what you want to see in random data. Once

  the samples were prepared, we had only to wait for the automated ma-

  chine to do the analyses. Glenn promised to call me the next day with

  our first results.

  “Hi, Bob. Looks like we have some data,” he reported the next af-

  ternoon. “Got a pen?” I scribbled down a long list of specimen num-

  bers and D:L ratios. Quite a few of the numbers were close to 1.00—no

  effect. But there were also several values significantly higher and lower:

  0.958, 1.031, 0.965, and other numbers that pointed to a possible chiral

  effect.

  “Of course we’ll have to repeat all these analyses a couple more

  times,” Glenn added. I was to learn that performing analyses in tripli-

  cate (at a minimum) was one of his trademarks.

  “What sorts of reproducibility do we have?”

  “Looks like about plus-or-minus half a percent. Not bad.” I was

  amazed. Errors smaller than 1 percent were almost unheard of in this

  business.

  As soon as I had sorted out which analysis went with which face, a

  clear and compelling story began to emerge from the data. Left-handed

  calcite faces almost universally displayed D:L ratios a few percent less

  than 1.00. These faces preferentially retained L-aspartic acid. The right-

  handed calcite crystal faces displayed an equal and opposite affinity for

  D-aspartic acid. Equally important, all of the nonchiral fracture

  surfaces, which served as our experiment’s internal control yielded

  D:L ratios indistinguishable from 1.00. Glenn’s repeat analyses of each

  sample over the next week reinforced the story.

  We wrote up the results quickly and submitted the short manu-

  script to the Proceedings of the National Academy of Sciences, with Hat

  Yoder serving as the sponsoring Academy member. The discovery that

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  185

  chiral crystal faces of calcite selectively adsorb D- and L-amino acids

  suggested not only a plausible chiral environment on the early Earth,

  but also a possible mechanism for making functional biological mac-

  romolecules. If adsorbed L-amino acids lined up sequentially on the

  crystal surface, then they might be poised to link to each other, form-

  ing a protein-like polymer of amino acids. Perhaps in this way mineral

  surfaces selected, organized, and assembled the first homochiral

  biomolecules.

  As we had hoped, a few workers in the origin-of-life community

  noticed our results. What we had not anticipated was significant inter-

  est from chemical engineers engaged in the design and purification of

  chiral pharmaceuticals. Our work on chiral mineral surfaces had

  opened the door to a host of possible industrial applications in the

  $100-billion-a-year chiral drug business.

  For our part, Glenn and I saw the aspartic acid study as the begin-

  ning of a long and fruitful collaboration. Next on the agenda were simi-

  lar experiments with D- and L-glutamic acid, another amino acid that

  binds readily to calcite. We also plotted out new experiments with left-

  and right-handed quartz crystals. As our friendship grew, so did my

  interest in his other research projects, and he signed up my wife and

  me as field hands for his next Bahamain field season the following

  December.

  It was during these new experiments that Glenn, uncharacteristi-

  cally, began to complain of an incessant pain in his jaw. A drug-resistant

  tooth infection had gradually spread through his mouth and into his

  sinuses. Worse than the pain, the disease numbed Glenn’s sense of taste.

  He began to lose weight rapidly. He stopped drinking wine. In March

  of 2002, the antibiotic Cipro seemed to turn the tide. Glenn rallied and

  he even agreed to visit a favorite lunch spot, Pizza Paradiso, where for

  the first time in weeks he managed to eat most of his lunch. We talked

  optimistically of our December trip to the Bahamas.

  Though weakened, Glenn returned to his lab and began to

  recalibrate the sensitive analytical machines that had sat idle for so

  long. On March 27th, we enjoyed a brief, sobering visit from Steve

  Gould, whose magnum opus, On the Structure of Evolutionary Theory,

  had just appeared in print. Steve talked optimistically about the

  upcoming fieldwork, but he had just been diagnosed with a fast-

  spreading cancer and he tired quickly. During much of the visit, he sat

  in front of piles of his beloved Cerion, picking up one after another,

  186

  GENESIS

  pointing out unusual features. He kept saying “I need another 20 years.

  I just need another 20 years.” [Plate 8]

  But it was not to be. Stephen Jay Gould died of cancer on May

  20th, fewer than two months later.

  By the end of May, Glenn’s infection had returned with increased

  virulence, spreading to his brain, confusing his thoughts. During our

  last halting conversation, in early October, he fretted about the long

  hiatus in his research. He spoke eagerly of the December field trip to

  the Bahamas, as if in another few weeks he’d be well again. In his de-

  lirium, he anticipated meeting Steve Gould on the island.

  Glenn Goodfriend died on October 15, 2002, at the age of 51. The

  chance to know and work with him was one of the greatest gifts of my

  career, and his decline and death one of the saddest events I’ve ever

  had to experience. For months I was paralyzed by the loss. Asking any-

  one else to fill Glenn’s shoes seemed disrespectful, like marrying again

  too soon after the death of a spouse. Colorful crystals lay idle in my lab.

  More than a hundred vials of amino acids sat unanalyzed. Only gradu-

  ally, with the help of new collaborators, did the chiral-selection project

  get back on track.

  Scientists don’t know for certain—and may never know for certain—

  how life’s homochirality emerged from the random prebiotic milieu,

  but we have targeted an expanded repertoire of promising local chiral

  environments. Perhaps life’s molecules self-select for handedness. Or

  perhaps they spontaneously assemble on chiral mineral surfaces. What-

  ev
er the answer, these ideas offer years of opportunities for origin-of-

  life researchers (and chemical engineers, as well).

  What we can say for sure at this stage is that mineral surfaces are

  remarkably successful at selecting, concentrating, and organizing or-

  ganic compounds. Thanks to quartz, calcite, and a growing list of other

  crystals, the mystery of the emergence of organized molecular systems

  from the complex prebiotic soup seems a lot closer to being solved. It

  would appear that minerals played a far more central role in the origin

  of life than previously imagined. Armed with that understanding,

  chemists, biologists, and geologists are embracing a more integrated

  approach to one of science’s oldest questions.

  Interlude—Where Are the Women?

  Reading your manuscript is really depressing.

  Where are the women?

  Sara Seager, 2004

  Even a cursory scan of this book reveals a field that has been

  overwhelmingly dominated by white males. Why should this

  be? Who’s to blame?

  The answer certainly isn’t in the nature of the discipline. A

  few scientific subjects, like field geology and high-pressure re-

  search, require extraordinary physical exertion and carry a level

  of risk that provided a convenient excuse for decades of almost

  exclusive male domination. But no such hardships are associated

  with research on life’s origins, a field that holds intrinsic fascina-

  tion for men and women alike. Yet hardly a single female ap-

  peared as coauthor on any origins paper in the three decades

  following Stanley Miller’s 1953 landmark article.

  I don’t know why, but I suspect that two factors played a sig-

  nificant role in this unfortunate, embarrassing bias.

  First, the origin-of-life field is small, and by simple bad for-

  tune several of the most prominent leaders during the 1950s

  through the 1970s were male professors who were at best

  unsupportive of women students (if not downright misogynistic).

  All young scientists need the encouragement of mentors and the

  inspiration of role models. Lacking this support system, women

  felt excluded from the origins club. Only within the past decade

  has the research environment changed enough to provide women

  with a more conducive environment in which to excel.

  Second, the best and brightest women scientists may have

 

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