A Short History of Nearly Everything

by Bill Bryson

  But about 3.5 billion years ago something more emphatic became apparent. Wherever the seas were shallow, visible structures began to appear. As they went through their chemical routines, the cyanobacteria became very slightly tacky, and that tackiness trapped microparticles of dust and sand, which became bound together to form slightly weird but solid structures--the stromatolites that were featured in the shallows of the poster on Victoria Bennett's office wall. Stromatolites came in various shapes and sizes. Sometimes they looked like enormous cauliflowers, sometimes like fluffy mattresses ( stromatolite comes from the Greek for "mattress"), sometimes they came in the form of columns, rising tens of meters above the surface of the water--sometimes as high as a hundred meters. In all their manifestations, they were a kind of living rock, and they represented the world's first cooperative venture, with some varieties of primitive organism living just at the surface and others living just underneath, each taking advantage of conditions created by the other. The world had its first ecosystem.

  For many years, scientists knew about stromatolites from fossil formations, but in 1961 they got a real surprise with the discovery of a community of living stromatolites at Shark Bay on the remote northwest coast of Australia. This was most unexpected--so unexpected, in fact, that it was some years before scientists realized quite what they had found. Today, however, Shark Bay is a tourist attraction--or at least as much of a tourist attraction as a place hundreds of miles from anywhere much and dozens of miles from anywhere at all can ever be. Boardwalks have been built out into the bay so that visitors can stroll over the water to get a good look at the stromatolites, quietly respiring just beneath the surface. They are lusterless and gray and look, as I recorded in an earlier book, like very large cow-pats. But it is a curiously giddying moment to find yourself staring at living remnants of Earth as it was 3.5 billion years ago. As Richard Fortey has put it: "This is truly time traveling, and if the world were attuned to its real wonders this sight would be as well-known as the pyramids of Giza." Although you'd never guess it, these dull rocks swarm with life, with an estimated (well, obviously estimated) three billion individual organisms on every square yard of rock. Sometimes when you look carefully you can see tiny strings of bubbles rising to the surface as they give up their oxygen. In two billion years such tiny exertions raised the level of oxygen in Earth's atmosphere to 20 percent, preparing the way for the next, more complex chapter in life's history.

  It has been suggested that the cyanobacteria at Shark Bay are perhaps the slowest-evolving organisms on Earth, and certainly now they are among the rarest. Having prepared the way for more complex life forms, they were then grazed out of existence nearly everywhere by the very organisms whose existence they had made possible. (They exist at Shark Bay because the waters are too saline for the creatures that would normally feast on them.)

  One reason life took so long to grow complex was that the world had to wait until the simpler organisms had oxygenated the atmosphere sufficiently. "Animals could not summon up the energy to work," as Fortey has put it. It took about two billion years, roughly 40 percent of Earth's history, for oxygen levels to reach more or less modern levels of concentration in the atmosphere. But once the stage was set, and apparently quite suddenly, an entirely new type of cell arose--one with a nucleus and other little bodies collectively called organelles (from a Greek word meaning "little tools"). The process is thought to have started when some blundering or adventuresome bacterium either invaded or was captured by some other bacterium and it turned out that this suited them both. The captive bacterium became, it is thought, a mitochondrion. This mitochondrial invasion (or endosymbiotic event, as biologists like to term it) made complex life possible. (In plants a similar invasion produced chloroplasts, which enable plants to photosynthesize.)

  Mitochondria manipulate oxygen in a way that liberates energy from foodstuffs. Without this niftily facilitating trick, life on Earth today would be nothing more than a sludge of simple microbes. Mitochondria are very tiny--you could pack a billion into the space occupied by a grain of sand--but also very hungry. Almost every nutriment you absorb goes to feeding them.

  We couldn't live for two minutes without them, yet even after a billion years mitochondria behave as if they think things might not work out between us. They maintain their own DNA. They reproduce at a different time from their host cell. They look like bacteria, divide like bacteria, and sometimes respond to antibiotics in the way bacteria do. In short, they keep their bags packed. They don't even speak the same genetic language as the cell in which they live. It is like having a stranger in your house, but one who has been there for a billion years.

  The new type of cell is known as a eukaryote (meaning "truly nucleated"), as contrasted with the old type, which is known as a prokaryote ("prenucleated"), and it seems to have arrived suddenly in the fossil record. The oldest eukaryotes yet known, called Grypania, were discovered in iron sediments in Michigan in 1992. Such fossils have been found just once, and then no more are known for 500 million years.

  Compared with the new eukaryotes the old prokaryotes were little more than "bags of chemicals," in the words of the geologist Stephen Drury. Eukaryotes were bigger--eventually as much as ten thousand times bigger--than their simpler cousins, and carried as much as a thousand times more DNA. Gradually a system evolved in which life was dominated by two types of form--organisms that expel oxygen (like plants) and those that take it in (you and me).

  Single-celled eukaryotes were once called protozoa ("pre-animals"), but that term is increasingly disdained. Today the common term for them is protists . Compared with the bacteria that had gone before, these new protists were wonders of design and sophistication. The simple amoeba, just one cell big and without any ambitions but to exist, contains 400 million bits of genetic information in its DNA--enough, as Carl Sagan noted, to fill eighty books of five hundred pages.

  Eventually the eukaryotes learned an even more singular trick. It took a long time--a billion years or so--but it was a good one when they mastered it. They learned to form together into complex multicellular beings. Thanks to this innovation, big, complicated, visible entities like us were possible. Planet Earth was ready to move on to its next ambitious phase.

  But before we get too excited about that, it is worth remembering that the world, as we are about to see, still belongs to the very small.

  20 SMALL WORLD

  IT'S PROBABLY NOT a good idea to take too personal an interest in your microbes. Louis Pasteur, the great French chemist and bacteriologist, became so preoccupied with them that he took to peering critically at every dish placed before him with a magnifying glass, a habit that presumably did not win him many repeat invitations to dinner.

  In fact, there is no point in trying to hide from your bacteria, for they are on and around you always, in numbers you can't conceive. If you are in good health and averagely diligent about hygiene, you will have a herd of about one trillion bacteria grazing on your fleshy plains--about a hundred thousand of them on every square centimeter of skin. They are there to dine off the ten billion or so flakes of skin you shed every day, plus all the tasty oils and fortifying minerals that seep out from every pore and fissure. You are for them the ultimate food court, with the convenience of warmth and constant mobility thrown in. By way of thanks, they give you B.O.

  And those are just the bacteria that inhabit your skin. There are trillions more tucked away in your gut and nasal passages, clinging to your hair and eyelashes, swimming over the surface of your eyes, drilling through the enamel of your teeth. Your digestive system alone is host to more than a hundred trillion microbes, of at least four hundred types. Some deal with sugars, some with starches, some attack other bacteria. A surprising number, like the ubiquitous intestinal spirochetes, have no detectable function at all. They just seem to like to be with you. Every human body consists of about 10 quadrillion cells, but about 100 quadrillion bacterial cells. They are, in short, a big part of us. From the bacteria's po
int of view, of course, we are a rather small part of them.

  Because we humans are big and clever enough to produce and utilize antibiotics and disinfectants, it is easy to convince ourselves that we have banished bacteria to the fringes of existence. Don't you believe it. Bacteria may not build cities or have interesting social lives, but they will be here when the Sun explodes. This is their planet, and we are on it only because they allow us to be.

  Bacteria, never forget, got along for billions of years without us. We couldn't survive a day without them. They process our wastes and make them usable again; without their diligent munching nothing would rot. They purify our water and keep our soils productive. Bacteria synthesize vitamins in our gut, convert the things we eat into useful sugars and polysaccharides, and go to war on alien microbes that slip down our gullet.

  We depend totally on bacteria to pluck nitrogen from the air and convert it into useful nucleotides and amino acids for us. It is a prodigious and gratifying feat. As Margulis and Sagan note, to do the same thing industrially (as when making fertilizers) manufacturers must heat the source materials to 500 degrees centigrade and squeeze them to three hundred times normal pressures. Bacteria do it all the time without fuss, and thank goodness, for no larger organism could survive without the nitrogen they pass on. Above all, microbes continue to provide us with the air we breathe and to keep the atmosphere stable. Microbes, including the modern versions of cyanobacteria, supply the greater part of the planet's breathable oxygen. Algae and other tiny organisms bubbling away in the sea blow out about 150 billion kilos of the stuff every year.

  And they are amazingly prolific. The more frantic among them can yield a new generation in less than ten minutes; Clostridium perfringens , the disagreeable little organism that causes gangrene, can reproduce in nine minutes. At such a rate, a single bacterium could theoretically produce more offspring in two days than there are protons in the universe. "Given an adequate supply of nutrients, a single bacterial cell can generate 280,000 billion individuals in a single day," according to the Belgian biochemist and Nobel laureate Christian de Duve. In the same period, a human cell can just about manage a single division.

  About once every million divisions, they produce a mutant. Usually this is bad luck for the mutant--change is always risky for an organism--but just occasionally the new bacterium is endowed with some accidental advantage, such as the ability to elude or shrug off an attack of antibiotics. With this ability to evolve rapidly goes another, even scarier advantage. Bacteria share information. Any bacterium can take pieces of genetic coding from any other. Essentially, as Margulis and Sagan put it, all bacteria swim in a single gene pool. Any adaptive change that occurs in one area of the bacterial universe can spread to any other. It's rather as if a human could go to an insect to get the necessary genetic coding to sprout wings or walk on ceilings. It means that from a genetic point of view bacteria have become a single superorganism--tiny, dispersed, but invincible.

  They will live and thrive on almost anything you spill, dribble, or shake loose. Just give them a little moisture--as when you run a damp cloth over a counter--and they will bloom as if created from nothing. They will eat wood, the glue in wallpaper, the metals in hardened paint. Scientists in Australia found microbes known as Thiobacillus concretivorans that lived in--indeed, could not live without--concentrations of sulfuric acid strong enough to dissolve metal. A species called Micrococcus radiophilus was found living happily in the waste tanks of nuclear reactors, gorging itself on plutonium and whatever else was there. Some bacteria break down chemical materials from which, as far as we can tell, they gain no benefit at all.

  They have been found living in boiling mud pots and lakes of caustic soda, deep inside rocks, at the bottom of the sea, in hidden pools of icy water in the McMurdo Dry Valleys of Antarctica, and seven miles down in the Pacific Ocean where pressures are more than a thousand times greater than at the surface, or equivalent to being squashed beneath fifty jumbo jets. Some of them seem to be practically indestructible. Deinococcus radiodurans is, according to the Economist , "almost immune to radioactivity." Blast its DNA with radiation, and the pieces immediately reform "like the scuttling limbs of an undead creature from a horror movie."

  Perhaps the most extraordinary survival yet found was that of a Streptococcus bacterium that was recovered from the sealed lens of a camera that had stood on the Moon for two years. In short, there are few environments in which bacteria aren't prepared to live. "They are finding now that when they push probes into ocean vents so hot that the probes actually start to melt, there are bacteria even there," Victoria Bennett told me.

  In the 1920s two scientists at the University of Chicago, Edson Bastin and Frank Greer, announced that they had isolated from oil wells strains of bacteria that had been living at depths of two thousand feet. The notion was dismissed as fundamentally preposterous--there was nothing to live on at two thousand feet--and for fifty years it was assumed that their samples had been contaminated with surface microbes. We now know that there are a lot of microbes living deep within the Earth, many of which have nothing at all to do with the organic world. They eat rocks or, rather, the stuff that's in rocks--iron, sulfur, manganese, and so on. And they breathe odd things too--iron, chromium, cobalt, even uranium. Such processes may be instrumental in concentrating gold, copper, and other precious metals, and possibly deposits of oil and natural gas. It has even been suggested that their tireless nibblings created the Earth's crust.

  Some scientists now think that there could be as much as 100 trillion tons of bacteria living beneath our feet in what are known as subsurface lithoautotrophic microbial ecosystems--SLiME for short. Thomas Gold of Cornell has estimated that if you took all the bacteria out of the Earth's interior and dumped it on the surface, it would cover the planet to a depth of five feet. If the estimates are correct, there could be more life under the Earth than on top of it.

  At depth microbes shrink in size and become extremely sluggish. The liveliest of them may divide no more than once a century, some no more than perhaps once in five hundred years. As the Economist has put it: "The key to long life, it seems, is not to do too much." When things are really tough, bacteria are prepared to shut down all systems and wait for better times. In 1997 scientists successfully activated some anthrax spores that had lain dormant for eighty years in a museum display in Trondheim, Norway. Other microorganisms have leapt back to life after being released from a 118-year-old can of meat and a 166-year-old bottle of beer. In 1996, scientists at the Russian Academy of Science claimed to have revived bacteria frozen in Siberian permafrost for three million years. But the record claim for durability so far is one made by Russell Vreeland and colleagues at West Chester University in Pennsylvania in 2000, when they announced that they had resuscitated 250-million-year-old bacteria called Bacillus permians that had been trapped in salt deposits two thousand feet underground in Carlsbad, New Mexico. If so, this microbe is older than the continents.

  The report met with some understandable dubiousness. Many biochemists maintained that over such a span the microbe's components would have become uselessly degraded unless the bacterium roused itself from time to time. However, if the bacterium did stir occasionally there was no plausible internal source of energy that could have lasted so long. The more doubtful scientists suggested that the sample may have been contaminated, if not during its retrieval then perhaps while still buried. In 2001, a team from Tel Aviv University argued that B. permians were almost identical to a strain of modern bacteria, Bacillus marismortui , found in the Dead Sea. Only two of its genetic sequences differed, and then only slightly.

  "Are we to believe," the Israeli researchers wrote, "that in 250 million years B. permians has accumulated the same amount of genetic differences that could be achieved in just 3-7 days in the laboratory?" In reply, Vreeland suggested that "bacteria evolve faster in the lab than they do in the wild."

  Maybe.

  It is a remarkable fact that well into t
he space age, most school textbooks divided the world of the living into just two categories--plant and animal. Microorganisms hardly featured. Amoebas and similar single-celled organisms were treated as proto-animals and algae as proto-plants. Bacteria were usually lumped in with plants, too, even though everyone knew they didn't belong there. As far back as the late nineteenth century the German naturalist Ernst Haeckel had suggested that bacteria deserved to be placed in a separate kingdom, which he called Monera, but the idea didn't begin to catch on among biologists until the 1960s and then only among some of them. (I note that my trusty American Heritage desk dictionary from 1969 doesn't recognize the term.)

  Many organisms in the visible world were also poorly served by the traditional division. Fungi, the group that includes mushrooms, molds, mildews, yeasts, and puffballs, were nearly always treated as botanical objects, though in fact almost nothing about them--how they reproduce and respire, how they build themselves--matches anything in the plant world. Structurally they have more in common with animals in that they build their cells from chitin, a material that gives them their distinctive texture. The same substance is used to make the shells of insects and the claws of mammals, though it isn't nearly so tasty in a stag beetle as in a Portobello mushroom. Above all, unlike all plants, fungi don't photosynthesize, so they have no chlorophyll and thus are not green. Instead they grow directly on their food source, which can be almost anything. Fungi will eat the sulfur off a concrete wall or the decaying matter between your toes--two things no plant will do. Almost the only plantlike quality they have is that they root.

  Even less comfortably susceptible to categorization was the peculiar group of organisms formally called myxomycetes but more commonly known as slime molds. The name no doubt has much to do with their obscurity. An appellation that sounded a little more dynamic--"ambulant self-activating protoplasm," say--and less like the stuff you find when you reach deep into a clogged drain would almost certainly have earned these extraordinary entities a more immediate share of the attention they deserve, for slime molds are, make no mistake, among the most interesting organisms in nature. When times are good, they exist as one-celled individuals, much like amoebas. But when conditions grow tough, they crawl to a central gathering place and become, almost miraculously, a slug. The slug is not a thing of beauty and it doesn't go terribly far--usually just from the bottom of a pile of leaf litter to the top, where it is in a slightly more exposed position--but for millions of years this may well have been the niftiest trick in the universe.